Detailed information of SNP:
|
SNP ID:
sf0610643322(Gbrowse)
Chromosome: chr06 Position: 10643322 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 60.59% | 39.41% |
| All Indica | 796 | 34.05% | 65.95% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 30.75% | 69.25% |
| Indica II | 211 | 37.44% | 62.56% |
| Indica Intermediate | 211 | 36.49% | 63.51% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610643322 | G->A | INTERGENIC | None |