Detailed information of SNP:
|
SNP ID:
sf0610644251(Gbrowse)
Chromosome: chr06 Position: 10644251 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 55.94% | 44.06% |
| All Indica | 796 | 87.94% | 12.06% |
| All Japonica | 496 | 11.69% | 88.31% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 373 | 89.81% | 10.19% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 78.10% | 21.90% |
| Temperate Japonica | 334 | 8.38% | 91.62% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610644251 | G->A | INTERGENIC | None |