Detailed information of SNP:
|
SNP ID:
sf0610644258(Gbrowse)
Chromosome: chr06 Position: 10644258 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 51.59% | 48.41% |
| All Indica | 795 | 83.52% | 16.48% |
| All Japonica | 497 | 6.84% | 93.16% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 89.33% | 10.67% |
| Indica II | 212 | 87.26% | 12.74% |
| Indica Intermediate | 208 | 69.23% | 30.77% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610644258 | C->T | INTERGENIC | None |