Detailed information of SNP:
|
SNP ID:
sf0610644392(Gbrowse)
Chromosome: chr06 Position: 10644392 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 95.16% | 4.84% |
| All Indica | 772 | 92.88% | 7.12% |
| All Japonica | 494 | 98.79% | 1.21% |
| Aus | 62 | 96.77% | 3.23% |
| Indica I | 361 | 91.97% | 8.03% |
| Indica II | 201 | 90.55% | 9.45% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 94.57% | 5.43% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610644392 | C->T | INTERGENIC | None |