Detailed information of SNP:
|
SNP ID:
sf0610644430(Gbrowse)
Chromosome: chr06 Position: 10644430 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 54.35% | 45.65% |
| All Indica | 797 | 86.45% | 13.55% |
| All Japonica | 493 | 9.13% | 90.87% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 209 | 75.12% | 24.88% |
| Temperate Japonica | 331 | 4.83% | 95.17% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610644430 | C->T | INTERGENIC | None |