Detailed information of SNP:
|
SNP ID:
sf0610644512(Gbrowse)
Chromosome: chr06 Position: 10644512 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 54.57% | 45.43% |
| All Indica | 795 | 87.04% | 12.96% |
| All Japonica | 493 | 9.13% | 90.87% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 374 | 91.98% | 8.02% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 208 | 75.48% | 24.52% |
| Temperate Japonica | 331 | 5.14% | 94.86% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610644512 | C->A | INTERGENIC | None |