Detailed information of SNP:
|
SNP ID:
sf0610644681(Gbrowse)
Chromosome: chr06 Position: 10644681 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 55.34% | 44.66% |
| All Indica | 797 | 88.08% | 11.92% |
| All Japonica | 493 | 9.13% | 90.87% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 209 | 76.56% | 23.44% |
| Temperate Japonica | 331 | 4.83% | 95.17% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610644681 | A->G | INTERGENIC | None |