Detailed information of SNP:
|
SNP ID:
sf0610645457(Gbrowse)
Chromosome: chr06 Position: 10645457 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 53.31% | 46.69% |
| All Indica | 799 | 85.86% | 14.14% |
| All Japonica | 496 | 7.26% | 92.74% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 334 | 2.40% | 97.60% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610645457 | G->A | INTERGENIC | None |