Detailed information of SNP:
|
SNP ID:
sf0610647814(Gbrowse)
Chromosome: chr06 Position: 10647814 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 88.65% | 11.35% |
| All Indica | 799 | 83.98% | 16.02% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 81.87% | 18.13% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610647814 | G->A | INTERGENIC | None |