Detailed information of SNP:
|
SNP ID:
sf0610648150(Gbrowse)
Chromosome: chr06 Position: 10648150 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 52.82% | 47.18% |
| All Indica | 799 | 85.48% | 14.52% |
| All Japonica | 497 | 6.84% | 93.16% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610648150 | A->G | INTERGENIC | None |