Detailed information of SNP:
|
SNP ID:
sf0610648208(Gbrowse)
Chromosome: chr06 Position: 10648208 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 57.28% | 42.72% |
| All Indica | 798 | 90.10% | 9.90% |
| All Japonica | 493 | 11.36% | 88.64% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 374 | 92.25% | 7.75% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 331 | 7.85% | 92.15% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610648208 | C->T | INTERGENIC | None |