Detailed information of SNP:
|
SNP ID:
sf0610648533(Gbrowse)
Chromosome: chr06 Position: 10648533 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 96.81% | 3.19% |
| All Indica | 799 | 96.37% | 3.63% |
| All Japonica | 488 | 96.93% | 3.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 326 | 96.01% | 3.99% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610648533 | G->T | INTERGENIC | None |