Detailed information of SNP:
|
SNP ID:
sf0610660118(Gbrowse)
Chromosome: chr06 Position: 10660118 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 54.62% | 45.38% |
| All Indica | 799 | 87.73% | 12.27% |
| All Japonica | 497 | 7.24% | 92.76% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610660118 | G->A | INTERGENIC | None |