Detailed information of SNP:
|
SNP ID:
sf0610673309(Gbrowse)
Chromosome: chr06 Position: 10673309 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 54.62% | 45.38% |
| All Indica | 799 | 87.98% | 12.02% |
| All Japonica | 497 | 7.24% | 92.76% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610673309 | C->G | INTERGENIC | None |