Detailed information of SNP:
|
SNP ID:
sf0610674958(Gbrowse)
Chromosome: chr06 Position: 10674958 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 87.03% | 12.97% |
| All Indica | 783 | 79.69% | 20.31% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 76.52% | 23.48% |
| Indica II | 212 | 74.06% | 25.94% |
| Indica Intermediate | 209 | 90.91% | 9.09% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610674958 | T->C | INTERGENIC | None |