Detailed information of SNP:
|
SNP ID:
sf0610675253(Gbrowse)
Chromosome: chr06 Position: 10675253 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 54.63% | 45.37% |
| All Indica | 763 | 26.21% | 73.79% |
| All Japonica | 496 | 93.35% | 6.65% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 361 | 18.28% | 81.72% |
| Indica II | 199 | 37.69% | 62.31% |
| Indica Intermediate | 203 | 29.06% | 70.94% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 75.27% | 24.73% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610675253 | G->A | INTERGENIC | None |