Detailed information of SNP:
|
SNP ID:
sf0610677496(Gbrowse)
Chromosome: chr06 Position: 10677496 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 56.10% | 43.90% |
| All Indica | 799 | 28.29% | 71.71% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 25.07% | 74.93% |
| Indica II | 213 | 35.21% | 64.79% |
| Indica Intermediate | 211 | 27.01% | 72.99% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610677496 | C->T | INTERGENIC | None |