Detailed information of SNP:
|
SNP ID:
sf0610678625(Gbrowse)
Chromosome: chr06 Position: 10678625 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 66.38% | 33.62% |
| All Indica | 799 | 89.11% | 10.89% |
| All Japonica | 497 | 38.43% | 61.57% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 46.87% | 53.13% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610678625 | A->G | INTERGENIC | None |