Detailed information of SNP:
|
SNP ID:
sf0610678716(Gbrowse)
Chromosome: chr06 Position: 10678716 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 82.22% | 17.78% |
| All Indica | 799 | 91.61% | 8.39% |
| All Japonica | 495 | 63.64% | 36.36% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 333 | 48.05% | 51.95% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610678716 | C->T | INTERGENIC | None |