Detailed information of SNP:
|
SNP ID:
sf0610680499(Gbrowse)
Chromosome: chr06 Position: 10680499 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 71.25% | 28.75% |
| All Indica | 799 | 75.22% | 24.78% |
| All Japonica | 497 | 59.76% | 40.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 80.00% | 20.00% |
| Indica II | 213 | 65.73% | 34.27% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 335 | 47.16% | 52.84% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610680499 | G->A | LOC_Os06g18810(LOC_Os06g18810.1) | Non-Synonymous SNP |