Detailed information of SNP:
|
SNP ID:
sf0610682008(Gbrowse)
Chromosome: chr06 Position: 10682008 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 54.13% | 45.87% |
| All Indica | 797 | 87.45% | 12.55% |
| All Japonica | 497 | 6.84% | 93.16% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 374 | 92.25% | 7.75% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 210 | 78.10% | 21.90% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610682008 | G->A | LOC_Os06g18810(LOC_Os06g18810.1) | Non-Synonymous SNP |