Detailed information of SNP:
|
SNP ID:
sf0610683351(Gbrowse)
Chromosome: chr06 Position: 10683351 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 58.55% | 41.45% |
| All Indica | 798 | 91.35% | 8.65% |
| All Japonica | 497 | 13.28% | 86.72% |
| Aus | 66 | 12.12% | 87.88% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 9.85% | 90.15% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610683351 | G->A | INTERGENIC | None |