Detailed information of SNP:
|
SNP ID:
sf0610683752(Gbrowse)
Chromosome: chr06 Position: 10683752 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1349 | 78.43% | 21.57% |
| All Indica | 734 | 63.22% | 36.78% |
| All Japonica | 493 | 97.36% | 2.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 328 | 40.85% | 59.15% |
| Indica II | 203 | 77.83% | 22.17% |
| Indica Intermediate | 203 | 84.73% | 15.27% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 89.01% | 10.99% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610683752 | C->T | INTERGENIC | None |