Detailed information of SNP:
|
SNP ID:
sf0610683950(Gbrowse)
Chromosome: chr06 Position: 10683950 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 55.80% | 44.20% |
| All Indica | 795 | 91.32% | 8.68% |
| All Japonica | 496 | 8.27% | 91.73% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 208 | 83.65% | 16.35% |
| Temperate Japonica | 334 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610683950 | A->G | INTERGENIC | None |