Detailed information of SNP:
|
SNP ID:
sf0610684382(Gbrowse)
Chromosome: chr06 Position: 10684382 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 69.51% | 30.49% |
| All Indica | 797 | 94.10% | 5.90% |
| All Japonica | 497 | 39.44% | 60.56% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 335 | 47.76% | 52.24% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610684382 | G->A | INTERGENIC | None |