Detailed information of SNP:
|
SNP ID:
sf0610686476(Gbrowse)
Chromosome: chr06 Position: 10686476 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 70.87% | 29.13% |
| All Indica | 798 | 54.26% | 45.74% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 66.40% | 33.60% |
| Indica II | 213 | 17.84% | 82.16% |
| Indica Intermediate | 210 | 69.52% | 30.48% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610686476 | A->G | LOC_Os06g18820(LOC_Os06g18820.1) | INTRON |
| sf0610686476 | A->G | LOC_Os06g18820(LOC_Os06g18820.2) | UTR_3_PRIME |