Detailed information of SNP:
|
SNP ID:
sf0610686765(Gbrowse)
Chromosome: chr06 Position: 10686765 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 86.33% | 13.67% |
| All Indica | 799 | 80.48% | 19.52% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 82.67% | 17.33% |
| Indica II | 213 | 71.36% | 28.64% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610686765 | C->T | LOC_Os06g18820(LOC_Os06g18820.1) | INTRON |
| sf0610686765 | C->T | LOC_Os06g18820(LOC_Os06g18820.2) | UTR_3_PRIME |