Detailed information of SNP:
|
SNP ID:
sf0610692136(Gbrowse)
Chromosome: chr06 Position: 10692136 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1373 | 92.94% | 7.06% |
| All Indica | 795 | 100.00% | 0.00% |
| All Japonica | 463 | 79.27% | 20.73% |
| Aus | 61 | 100.00% | 0.00% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 319 | 73.35% | 26.65% |
| Tropical Japonica | 83 | 97.59% | 2.41% |
| Japonica Intermediate | 61 | 85.25% | 14.75% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610692136 | G->A | LOC_Os06g18830(LOC_Os06g18830.1) | Synonymous |