Detailed information of SNP:
|
SNP ID:
sf0610698176(Gbrowse)
Chromosome: chr06 Position: 10698176 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 89.81% | 10.19% |
| All Indica | 795 | 84.65% | 15.35% |
| All Japonica | 496 | 96.77% | 3.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 82.80% | 17.20% |
| Indica II | 212 | 78.30% | 21.70% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610698176 | C->T | INTERGENIC | None |