Detailed information of SNP:
|
SNP ID:
sf0610699216(Gbrowse)
Chromosome: chr06 Position: 10699216 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 67.87% | 32.13% |
| All Indica | 796 | 49.37% | 50.63% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 64.44% | 35.56% |
| Indica II | 211 | 15.64% | 84.36% |
| Indica Intermediate | 211 | 56.40% | 43.60% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610699216 | A->C | INTERGENIC | None |