Detailed information of SNP:
|
SNP ID:
sf0610721874(Gbrowse)
Chromosome: chr06 Position: 10721874 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 62.91% | 37.09% |
| All Indica | 799 | 41.18% | 58.82% |
| All Japonica | 496 | 93.75% | 6.25% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 24.00% | 76.00% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 211 | 43.60% | 56.40% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 78.49% | 21.51% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610721874 | C->T | INTERGENIC | None |