Detailed information of SNP:
|
SNP ID:
sf0610729893(Gbrowse)
Chromosome: chr06 Position: 10729893 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 77.08% | 22.92% |
| All Indica | 799 | 67.46% | 32.54% |
| All Japonica | 496 | 91.13% | 8.87% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 80.00% | 20.00% |
| Indica II | 213 | 63.38% | 36.62% |
| Indica Intermediate | 211 | 49.29% | 50.71% |
| Temperate Japonica | 335 | 91.64% | 8.36% |
| Tropical Japonica | 93 | 88.17% | 11.83% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610729893 | C->T | INTERGENIC | None |