Detailed information of SNP:
|
SNP ID:
sf0610729986(Gbrowse)
Chromosome: chr06 Position: 10729986 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 91.26% | 8.74% |
| All Indica | 798 | 86.59% | 13.41% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 81.07% | 18.93% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 88.10% | 11.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610729986 | C->T | INTERGENIC | None |