Detailed information of SNP:
|
SNP ID:
sf0610736980(Gbrowse)
Chromosome: chr06 Position: 10736980 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 81.09% | 18.91% |
| All Indica | 798 | 70.55% | 29.45% |
| All Japonica | 496 | 97.18% | 2.82% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 80.00% | 20.00% |
| Indica II | 212 | 72.64% | 27.36% |
| Indica Intermediate | 211 | 51.66% | 48.34% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610736980 | A->G | INTERGENIC | None |