Detailed information of SNP:
|
SNP ID:
sf0610756639(Gbrowse)
Chromosome: chr06 Position: 10756639 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 90.95% | 9.05% |
| All Indica | 797 | 86.45% | 13.55% |
| All Japonica | 496 | 96.98% | 3.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 84.72% | 15.28% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610756639 | G->A | LOC_Os06g18930(LOC_Os06g18930.1) | INTRON |