Detailed information of SNP:
|
SNP ID:
sf0610759334(Gbrowse)
Chromosome: chr06 Position: 10759334 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 69.44% | 30.56% |
| All Indica | 799 | 66.33% | 33.67% |
| All Japonica | 497 | 70.82% | 29.18% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 375 | 80.00% | 20.00% |
| Indica II | 213 | 63.38% | 36.62% |
| Indica Intermediate | 211 | 45.02% | 54.98% |
| Temperate Japonica | 335 | 62.09% | 37.91% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610759334 | T->C | INTERGENIC | None |