Detailed information of SNP:
|
SNP ID:
sf0610759934(Gbrowse)
Chromosome: chr06 Position: 10759934 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 77.95% | 22.05% |
| All Indica | 798 | 66.17% | 33.83% |
| All Japonica | 496 | 95.77% | 4.23% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 79.68% | 20.32% |
| Indica II | 213 | 63.38% | 36.62% |
| Indica Intermediate | 211 | 45.02% | 54.98% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610759934 | C->T | INTERGENIC | None |