Detailed information of SNP:
|
SNP ID:
sf0610760000(Gbrowse)
Chromosome: chr06 Position: 10760000 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 78.01% | 21.99% |
| All Indica | 799 | 66.46% | 33.54% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 80.27% | 19.73% |
| Indica II | 213 | 63.38% | 36.62% |
| Indica Intermediate | 211 | 45.02% | 54.98% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610760000 | T->C | INTERGENIC | None |