Detailed information of SNP:
|
SNP ID:
sf0610761996(Gbrowse)
Chromosome: chr06 Position: 10761996 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 81.06% | 18.94% |
| All Indica | 798 | 70.18% | 29.82% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 80.75% | 19.25% |
| Indica II | 213 | 63.85% | 36.15% |
| Indica Intermediate | 211 | 57.82% | 42.18% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610761996 | T->C | INTERGENIC | None |