Detailed information of SNP:
|
SNP ID:
sf0610763499(Gbrowse)
Chromosome: chr06 Position: 10763499 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 87.50% | 12.50% |
| All Indica | 797 | 80.80% | 19.20% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 373 | 81.23% | 18.77% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610763499 | T->C | LOC_Os06g18940(LOC_Os06g18940.1) | INTRON |