Detailed information of SNP:
|
SNP ID:
sf0610768167(Gbrowse)
Chromosome: chr06 Position: 10768167 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1257 | 86.32% | 13.68% |
| All Indica | 652 | 73.93% | 26.07% |
| All Japonica | 490 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 289 | 51.90% | 48.10% |
| Indica II | 176 | 97.73% | 2.27% |
| Indica Intermediate | 187 | 85.56% | 14.44% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 94.29% | 5.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610768167 | G->A | LOC_Os06g18950(LOC_Os06g18950.1) | Non-Synonymous SNP |