Detailed information of SNP:
|
SNP ID:
sf0610771053(Gbrowse)
Chromosome: chr06 Position: 10771053 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1378 | 81.35% | 18.65% |
| All Indica | 759 | 70.49% | 29.51% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 373 | 81.23% | 18.77% |
| Indica II | 212 | 63.68% | 36.32% |
| Indica Intermediate | 174 | 55.75% | 44.25% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610771053 | A->G | LOC_Os06g18950(LOC_Os06g18950.1) | INTRON |