Detailed information of SNP:
|
SNP ID:
sf0610771520(Gbrowse)
Chromosome: chr06 Position: 10771520 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 64.15% | 35.85% |
| All Indica | 798 | 60.78% | 39.22% |
| All Japonica | 497 | 66.60% | 33.40% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 374 | 72.19% | 27.81% |
| Indica II | 213 | 59.62% | 40.38% |
| Indica Intermediate | 211 | 41.71% | 58.29% |
| Temperate Japonica | 335 | 54.33% | 45.67% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610771520 | G->A | LOC_Os06g18950(LOC_Os06g18950.1) | Non-Synonymous SNP |