Detailed information of SNP:



SNP ID: sf0610773979(Gbrowse)

Chromosome: chr06

Position: 10773979
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1411 78.03% 21.97%
All Indica798 65.91% 34.09%
All Japonica492 96.14% 3.86%
Aus66 84.85% 15.15%
Indica I374 79.41% 20.59%
Indica II213 62.91% 37.09%
Indica Intermediate211 45.02% 54.98%
Temperate Japonica331 97.28% 2.72%
Tropical Japonica93 93.55% 6.45%
Japonica Intermediate68 94.12% 5.88%
Group VI/Aromatic14 92.86% 7.14%
Intermediate41 80.49% 19.51%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0610773979 T->C INTERGENIC None