Detailed information of SNP:
|
SNP ID:
sf0610773979(Gbrowse)
Chromosome: chr06 Position: 10773979 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 78.03% | 21.97% |
| All Indica | 798 | 65.91% | 34.09% |
| All Japonica | 492 | 96.14% | 3.86% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 374 | 79.41% | 20.59% |
| Indica II | 213 | 62.91% | 37.09% |
| Indica Intermediate | 211 | 45.02% | 54.98% |
| Temperate Japonica | 331 | 97.28% | 2.72% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610773979 | T->C | INTERGENIC | None |