Detailed information of SNP:
|
SNP ID:
sf0610777300(Gbrowse)
Chromosome: chr06 Position: 10777300 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1366 | 81.99% | 18.01% |
| All Indica | 750 | 71.20% | 28.80% |
| All Japonica | 495 | 97.58% | 2.42% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 373 | 80.97% | 19.03% |
| Indica II | 169 | 81.07% | 18.93% |
| Indica Intermediate | 208 | 45.67% | 54.33% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610777300 | T->C | INTERGENIC | None |