Detailed information of SNP:
|
SNP ID:
sf0610777839(Gbrowse)
Chromosome: chr06 Position: 10777839 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 79.18% | 20.82% |
| All Indica | 794 | 67.00% | 33.00% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 372 | 80.38% | 19.62% |
| Indica II | 213 | 63.38% | 36.62% |
| Indica Intermediate | 209 | 46.89% | 53.11% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610777839 | T->C | INTERGENIC | None |