Detailed information of SNP:
|
SNP ID:
sf0610778575(Gbrowse)
Chromosome: chr06 Position: 10778575 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 79.97% | 20.03% |
| All Indica | 790 | 68.10% | 31.90% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 368 | 82.61% | 17.39% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 209 | 46.41% | 53.59% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610778575 | T->G | INTERGENIC | None |