Detailed information of SNP:
|
SNP ID:
sf0610783438(Gbrowse)
Chromosome: chr06 Position: 10783438 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1337 | 54.90% | 45.10% |
| All Indica | 791 | 62.58% | 37.42% |
| All Japonica | 434 | 49.08% | 50.92% |
| Aus | 62 | 6.45% | 93.55% |
| Indica I | 368 | 76.09% | 23.91% |
| Indica II | 213 | 59.62% | 40.38% |
| Indica Intermediate | 210 | 41.90% | 58.10% |
| Temperate Japonica | 292 | 61.64% | 38.36% |
| Tropical Japonica | 85 | 22.35% | 77.65% |
| Japonica Intermediate | 57 | 24.56% | 75.44% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 36 | 61.11% | 38.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610783438 | A->G | LOC_Os06g18960(LOC_Os06g18960.1) | Synonymous |