Detailed information of SNP:
|
SNP ID:
sf0610786630(Gbrowse)
Chromosome: chr06 Position: 10786630 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 79.04% | 20.96% |
| All Indica | 798 | 66.67% | 33.33% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 80.48% | 19.52% |
| Indica II | 213 | 63.38% | 36.62% |
| Indica Intermediate | 211 | 45.50% | 54.50% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610786630 | A->G | INTERGENIC | None |