Detailed information of SNP:
|
SNP ID:
sf0610787749(Gbrowse)
Chromosome: chr06 Position: 10787749 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 72.14% | 27.86% |
| All Indica | 798 | 73.31% | 26.69% |
| All Japonica | 497 | 67.00% | 33.00% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 80.21% | 19.79% |
| Indica II | 213 | 63.38% | 36.62% |
| Indica Intermediate | 211 | 71.09% | 28.91% |
| Temperate Japonica | 335 | 54.63% | 45.37% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610787749 | G->A | INTERGENIC | None |